HL_3DEG_011

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_011 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.1152

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3DEG|1|I|C|2658
3DEG|1|I|G|2659
3DEG|1|I|A|2660
3DEG|1|I|G|2661
3DEG|1|I|A|2662
3DEG|1|I|G|2663

Current chains

Chain I

50S RNA helix 95

Nearby chains

Chain C

GTP-binding protein lepA