HL_3DEG_012

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3DEG|1|J|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DEG_012 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.0794

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

3DEG|1|J|G|1949
3DEG|1|J|G|1950
3DEG|1|J|U|1951
3DEG|1|J|A|1952
3DEG|1|J|A|1953
3DEG|1|J|G|1954
3DEG|1|J|U|1955
3DEG|1|J|U|1956
3DEG|1|J|C|1957

Current chains

Chain J

50S RNA helix 71

Nearby chains

Chain A

Transfer RNA; tRNA

Chain K

50S RNA helix 92