HL_3DS7_004

3D structure

PDB id

3DS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an RNA-2'-deoxyguanosine complex

Experimental method

X-RAY DIFFRACTION

Resolution

1.85 Å

Loop

Sequence

GGAUAUGGC

Length

9 nucleotides

Bulged bases

3DS7|1|B|U|236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3DS7_004 not in the Motif Atlas

Geometric match to HL_4FEN_001

Geometric discrepancy: 0.0359

The information below is about HL_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3DS7|1|B|G|231
3DS7|1|B|G|232
3DS7|1|B|A|233
3DS7|1|B|U|234
3DS7|1|B|A|235
3DS7|1|B|U|236
3DS7|1|B|G|237
3DS7|1|B|G|238
3DS7|1|B|C|239

Current chains

Chain B

67-MER

Nearby chains

Chain A

Purine riboswitch