HL_3FOZ_001

3D structure

PDB id

3FOZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

3FOZ|1|C|C|17, 3FOZ|1|C|G|18, 3FOZ|1|C|G|19, 3FOZ|1|C|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3FOZ_001 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.1069

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

3FOZ|1|C|C|13
3FOZ|1|C|A|14
3FOZ|1|C|G|15
3FOZ|1|C|U|16
3FOZ|1|C|C|17
3FOZ|1|C|G|18
3FOZ|1|C|G|19
3FOZ|1|C|U|20
3FOZ|1|C|A|21
3FOZ|1|C|G|22

Current chains

Chain C

tRNA(Phe)

Nearby chains

Chain B

tRNA delta(2)-isopentenylpyrophosphate transferase