HL_3G9C_002

3D structure

PDB id

3G9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the product Bacillus anthracis glmS ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGUGGGGUUUAU

Length

13 nucleotides

Bulged bases

3G9C|1|P|U|34, 3G9C|1|P|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3G9C_002 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.09

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3G9C|1|P|A|31
3G9C|1|P|G|32
3G9C|1|P|G|33
3G9C|1|P|U|34
3G9C|1|P|G|35
3G9C|1|P|G|36
3G9C|1|P|G|37
3G9C|1|P|G|38
3G9C|1|P|U|39
3G9C|1|P|U|40
3G9C|1|P|U|41
3G9C|1|P|A|42
3G9C|1|P|U|43

Current chains

Chain P

GLMS RIBOZYME

Nearby chains

Chain E

RNA (5'-R(*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3')

Chain Q

glmS glucosamine-6-phosphate activated ribozyme; glmS ribozyme