3G9C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3G9C_001 | 1/P/17A:17L | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_3G9C_002 | 1/P/31:43 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_3G9C_003 | 1/P/71:79 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.4 | |
| HL_3G9C_004 | 1/P/108:113 | GNRA | geometric HL_6JQ5_002 NA | |
| HL_3G9C_005 | 1/Q/17A:17L | U1 small nuclear ribonucleoprotein A binding hairpin | ||
| HL_3G9C_006 | 1/Q/31:43 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_3G9C_007 | 1/Q/71:79 | Pseudoknot geometry | ||
| HL_3G9C_008 | 1/Q/108:113 | GNRA | ||
| HL_3G9C_009 | 1/R/17A:17L | U1 small nuclear ribonucleoprotein A binding hairpin HL_36992.1 | ||
| HL_3G9C_010 | 1/R/31:43 | No text annotation HL_10466.1 | ||
| HL_3G9C_012 | 1/R/108:113 | GNRA HL_34789.1 | ||
| HL_3G9C_013 | 1/S/17A:17L | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_3G9C_014 | 1/S/31:43 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_3G9C_015 | 1/S/71:79 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.4 | |
| HL_3G9C_016 | 1/S/108:113 | GNRA | geometric HL_3G9C_008 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3G9C_011 | Pseudoknot geometry |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3G9C_001 | 1/E/5:7, 1/P/52:53 | Single bulged A | geometric IL_5J7L_302 NA | |
| IL_3G9C_005 | 1/F/5:7, 1/Q/52:53 | Single bulged A | ||
| IL_3G9C_008 | 1/G/5:7, 1/R/52:53 | Single bulged A IL_14190.1 | ||
| IL_3G9C_010 | 1/H/5:7, 1/S/52:53 | Single bulged A | geometric IL_3G9C_005 NA | |
| IL_3G9C_004 | 1/P/96:102, 1/P/119:126 | No text annotation | geometric IL_3G9C_007 NA | |
| IL_3G9C_007 | 1/Q/96:102, 1/Q/119:126 | No text annotation | geometric IL_2NZ4_006 NA | |
| IL_3G9C_013 | 1/R/92:102, 1/R/119:129 | No text annotation IL_35996.1 | ||
| IL_3G9C_012 | 1/S/96:102, 1/S/119:126 | No text annotation | geometric IL_3G9C_007 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3G9C_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3G9C_001 | 1/E/7:8, 1/P/26:29, 1/P/45:52 | No text annotation | geometric J3_3G9C_002 NA | |
| J3_3G9C_002 | 1/F/7:8, 1/Q/26:29, 1/Q/45:52 | No text annotation | geometric J3_2Z75_001 J3_75923.1 | |
| J3_3G9C_003 | 1/G/7:8, 1/R/26:29, 1/R/45:52 | No text annotation J3_75923.1 | ||
| J3_3G9C_004 | 1/H/7:8, 1/S/26:29, 1/S/45:52 | No text annotation | geometric J3_3G9C_002 NA |
Problematic loops
No problematic loops
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