HL_3HHN_002

3D structure

PDB id

3HHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3HHN_002 not in the Motif Atlas

Geometric match to HL_3IVK_002

Geometric discrepancy: 0.1286

The information below is about HL_3IVK_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

3HHN|1|C|C|40
3HHN|1|C|G|41
3HHN|1|C|A|42
3HHN|1|C|A|43
3HHN|1|C|G|44

Current chains

Chain C

Class I ligase ribozyme, self-ligation product

Nearby chains