HL_3IQP_001

3D structure

PDB id

3IQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch from T. tencongensis variant A94G apo form

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IQP_001 not in the Motif Atlas

Geometric match to HL_5FJC_001

Geometric discrepancy: 0.1184

The information below is about HL_5FJC_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3IQP|1|A|G|23
3IQP|1|A|A|24
3IQP|1|A|C|25
3IQP|1|A|U|26
3IQP|1|A|G|27
3IQP|1|A|G|28
3IQP|1|A|C|29

Current chains

Chain A

SAM-I riboswitch

Nearby chains