3IQP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3IQP_001 | 1/A/23:29 | Pseudoknot geometry | geometric HL_5FJC_001 HL_30680.5 | |
| HL_3IQP_002 | 1/A/49:54 | GNRA | geometric HL_5VW1_001 HL_34789.4 | |
| HL_3IQP_003 | 1/A/73:78 | No text annotation | geometric HL_4V88_198 NA | |
| HL_3IQP_004 | 1/A/23:29 | Pseudoknot geometry | geometric HL_5FJC_001 HL_30680.5 | |
| HL_3IQP_005 | 1/A/49:54 | GNRA | geometric HL_5VW1_001 HL_34789.4 | |
| HL_3IQP_006 | 1/A/73:78 | No text annotation | geometric HL_4V88_198 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3IQP_001 | 1/A/13:15, 1/A/40:41 | Minor groove platform | geometric IL_5T83_003 IL_34520.3 | |
| IL_3IQP_002 | 1/A/17:21, 1/A/31:38 | Kink-turn | geometric IL_5FJC_002 IL_90775.2 | |
| IL_3IQP_003 | 1/A/44:46, 1/A/57:58 | Major groove platform | geometric IL_7A0S_085 IL_48076.8 | |
| IL_3IQP_004 | 1/A/64:69, 1/A/82:85 | Pseudoknot | geometric IL_5FJC_004 IL_69145.4 | |
| IL_3IQP_005 | 1/A/13:15, 1/A/40:41 | Minor groove platform | geometric IL_5T83_003 IL_34520.3 | |
| IL_3IQP_006 | 1/A/17:21, 1/A/31:38 | Kink-turn | geometric IL_5FJC_002 IL_90775.2 | |
| IL_3IQP_007 | 1/A/44:46, 1/A/57:58 | Major groove platform | geometric IL_7A0S_085 IL_48076.8 | |
| IL_3IQP_008 | 1/A/64:69, 1/A/82:85 | Pseudoknot | geometric IL_5FJC_004 IL_69145.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3IQP_001 | 1/A/8:13, 1/A/41:42, 1/A/60:64, 1/A/85:86 | SAM-I riboswitch junction | homologous J4_5FJC_001 J4_40439.2 | |
| J4_3IQP_002 | 1/A/8:13, 1/A/41:42, 1/A/60:64, 1/A/85:86 | No text annotation |
Problematic loops
No problematic loops
Coloring options: