HL_3IWN_004

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

3IWN|1|B|C|162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3IWN_004 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1813

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3IWN|1|B|C|157
3IWN|1|B|A|158
3IWN|1|B|U|159
3IWN|1|B|U|160
3IWN|1|B|G|161
3IWN|1|B|C|162
3IWN|1|B|A|163
3IWN|1|B|C|164
3IWN|1|B|U|165
3IWN|1|B|C|166
3IWN|1|B|C|167
3IWN|1|B|G|168

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains

Chain D

U1 small nuclear ribonucleoprotein A