HL_3J0L_002
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_002 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.2487
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
3J0L|1|b|A|878
3J0L|1|b|G|879
3J0L|1|b|G|880
3J0L|1|b|U|881
3J0L|1|b|G|882
3J0L|1|b|A|883
3J0L|1|b|A|884
3J0L|1|b|A|885
3J0L|1|b|U|886
3J0L|1|b|U|887
Current chains
- Chain b
- 40S ribosomal RNA fragment
Nearby chains
- Chain K
- Ribosomal protein S14
- Chain T
- Ribosomal protein S5
- Chain W
- Transfer RNA; tRNA
- Chain c
- 40S ribosomal RNA fragment
- Chain w
- mRNA fragment
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