3D structure

PDB id
3J0L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
GACUCAACAC
Length
10 nucleotides
Bulged bases
3J0L|1|g|A|1168
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J0L_005 not in the Motif Atlas
Geometric match to HL_2ZNI_001
Geometric discrepancy: 0.1493
The information below is about HL_2ZNI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

3J0L|1|g|G|1160
3J0L|1|g|A|1161
3J0L|1|g|C|1162
3J0L|1|g|U|1163
3J0L|1|g|C|1164
3J0L|1|g|A|1165
3J0L|1|g|A|1166
3J0L|1|g|C|1167
3J0L|1|g|A|1168
3J0L|1|g|C|1169

Current chains

Chain g
40S ribosomal RNA fragment

Nearby chains

Chain G
40S ribosomal RNA fragment
Chain V
Transfer RNA; tRNA
Chain Y
Transfer RNA; tRNA
Chain f
40S ribosomal RNA fragment
Chain h
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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