HL_3J0L_009
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 3J0L|1|2|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_009 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.2655
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
3J0L|1|2|G|2253
3J0L|1|2|U|2254
3J0L|1|2|A|2255
3J0L|1|2|A|2256
3J0L|1|2|C|2257
3J0L|1|2|U|2258
3J0L|1|2|A|2259
3J0L|1|2|U|2260
3J0L|1|2|G|2261
3J0L|1|2|A|2262
3J0L|1|2|C|2263
Current chains
- Chain 2
- 60S ribosomal RNA fragment
Nearby chains
- Chain V
- Transfer RNA; tRNA
- Chain Y
- Transfer RNA; tRNA
- Chain c
- 40S ribosomal RNA fragment
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- mRNA fragment
Coloring options: