HL_3J0L_010
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 3J0L|1|2|U|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_010 not in the Motif Atlas
- Homologous match to HL_5TBW_050
- Geometric discrepancy: 0.2047
- The information below is about HL_5TBW_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
3J0L|1|2|U|2292
3J0L|1|2|C|2293
3J0L|1|2|U|2294
3J0L|1|2|A|2295
3J0L|1|2|A|2296
3J0L|1|2|U|2297
3J0L|1|2|U|2298
3J0L|1|2|A|2299
3J0L|1|2|G|2300
Current chains
- Chain 2
- 60S ribosomal RNA fragment
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: