HL_3J0L_025
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GGAUUGAAAAUCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_025 not in the Motif Atlas
- Homologous match to HL_4WT8_136
- Geometric discrepancy: 0.2516
- The information below is about HL_4WT8_136
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3J0L|1|W|G|29
3J0L|1|W|G|30
3J0L|1|W|A|31
3J0L|1|W|U|32
3J0L|1|W|U|33
3J0L|1|W|G|34
3J0L|1|W|A|35
3J0L|1|W|A|36
3J0L|1|W|A|37
3J0L|1|W|A|38
3J0L|1|W|U|39
3J0L|1|W|C|40
3J0L|1|W|C|41
Current chains
- Chain W
- tRNA
Nearby chains
- Chain E
- 40S ribosomal RNA fragment
- Chain K
- Ribosomal protein S14
- Chain T
- Ribosomal protein S5
- Chain V
- Transfer RNA; tRNA
- Chain b
- 40S ribosomal RNA fragment
- Chain c
- 40S ribosomal RNA fragment
- Chain d
- 40S ribosomal RNA fragment
- Chain e
- 40S ribosomal RNA fragment
- Chain w
- mRNA fragment
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