HL_3J0L_027
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GGUUCGAUUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_027 not in the Motif Atlas
- Homologous match to HL_4TUE_218
- Geometric discrepancy: 0.3111
- The information below is about HL_4TUE_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J0L|1|Y|G|52
3J0L|1|Y|G|53
3J0L|1|Y|U|54
3J0L|1|Y|U|55
3J0L|1|Y|C|56
3J0L|1|Y|G|57
3J0L|1|Y|A|58
3J0L|1|Y|U|59
3J0L|1|Y|U|60
3J0L|1|Y|C|61
3J0L|1|Y|C|62
Current chains
- Chain Y
- tRNA
Nearby chains
- Chain 1
- 60S ribosomal RNA fragment
- Chain 7
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- Ribosomal protein L10
Coloring options: