HL_3J0P_004

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0P_004 not in the Motif Atlas

Geometric match to HL_7QR8_001

Geometric discrepancy: 0.3074

The information below is about HL_7QR8_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3J0P|1|h|A|1660
3J0P|1|h|G|1661
3J0P|1|h|C|1662
3J0P|1|h|A|1663
3J0P|1|h|A|1664
3J0P|1|h|U|1665

Current chains

Chain h

40S ribosomal RNA fragment

Nearby chains