HL_3J0P_012
3D structure
- PDB id
- 3J0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 3J0P|1|W|C|17, 3J0P|1|W|U|17|||A, 3J0P|1|W|G|18, 3J0P|1|W|G|19, 3J0P|1|W|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0P_012 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.1851
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
3J0P|1|W|C|13
3J0P|1|W|A|14
3J0P|1|W|G|15
3J0P|1|W|C|16
3J0P|1|W|C|17
3J0P|1|W|U|17|||A
3J0P|1|W|G|18
3J0P|1|W|G|19
3J0P|1|W|U|20
3J0P|1|W|A|21
3J0P|1|W|G|22
Current chains
- Chain W
- tRNA
Nearby chains
- Chain 3
- 60S ribosomal RNA fragment
- Chain B
- Ribosomal protein L10a
Coloring options: