HL_3J0P_013
3D structure
- PDB id
- 3J0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0P_013 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1519
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
3J0P|1|W|G|31
3J0P|1|W|C|32
3J0P|1|W|U|33
3J0P|1|W|C|34
3J0P|1|W|A|35
3J0P|1|W|U|36
3J0P|1|W|A|37
3J0P|1|W|A|38
3J0P|1|W|C|39
Current chains
- Chain W
- tRNA
Nearby chains
- Chain G
- 40S ribosomal RNA fragment
- Chain c
- 40S ribosomal RNA fragment
- Chain d
- 40S ribosomal RNA fragment
- Chain g
- 40S ribosomal RNA fragment
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
- Chain w
- mRNA fragment
- Chain y
- mRNA fragment
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