HL_3J0P_015

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

GGUUCGAUUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0P_015 not in the Motif Atlas

Homologous match to HL_4TUE_218

Geometric discrepancy: 0.3111

The information below is about HL_4TUE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J0P|1|Y|G|52
3J0P|1|Y|G|53
3J0P|1|Y|U|54
3J0P|1|Y|U|55
3J0P|1|Y|C|56
3J0P|1|Y|G|57
3J0P|1|Y|A|58
3J0P|1|Y|U|59
3J0P|1|Y|U|60
3J0P|1|Y|C|61
3J0P|1|Y|C|62

Current chains

Chain Y

tRNA

Nearby chains

Chain 7

Large subunit ribosomal RNA; LSU rRNA