HL_3J0Q_010
3D structure
- PDB id
- 3J0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 3J0Q|1|Y|C|17, 3J0Q|1|Y|U|17|||A, 3J0Q|1|Y|G|18, 3J0Q|1|Y|G|19, 3J0Q|1|Y|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0Q_010 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.1851
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
3J0Q|1|Y|C|13
3J0Q|1|Y|A|14
3J0Q|1|Y|G|15
3J0Q|1|Y|C|16
3J0Q|1|Y|C|17
3J0Q|1|Y|U|17|||A
3J0Q|1|Y|G|18
3J0Q|1|Y|G|19
3J0Q|1|Y|U|20
3J0Q|1|Y|A|21
3J0Q|1|Y|G|22
Current chains
- Chain Y
- tRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: