HL_3J0Q_011
3D structure
- PDB id
- 3J0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0Q_011 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.152
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
3J0Q|1|Y|G|31
3J0Q|1|Y|C|32
3J0Q|1|Y|U|33
3J0Q|1|Y|C|34
3J0Q|1|Y|A|35
3J0Q|1|Y|U|36
3J0Q|1|Y|A|37
3J0Q|1|Y|A|38
3J0Q|1|Y|C|39
Current chains
- Chain Y
- tRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- Ribosomal protein S23
- Chain a
- 40S ribosomal RNA fragment
- Chain f
- 40S ribosomal RNA fragment
- Chain g
- 40S ribosomal RNA fragment
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- mRNA fragment
Coloring options: