HL_3J28_018

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J28_018 not in the Motif Atlas

Geometric match to HL_8VM9_005

Geometric discrepancy: 0.3482

The information below is about HL_8VM9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

3J28|1|N|C|840
3J28|1|N|C|841
3J28|1|N|U|842
3J28|1|N|U|843
3J28|1|N|G|844
3J28|1|N|A|845
3J28|1|N|G|846

Current chains

Chain N

16S rRNA

Nearby chains