HL_3J28_025

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

3J28|1|N|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J28_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.5636

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3J28|1|N|G|1089
3J28|1|N|U|1090
3J28|1|N|U|1091
3J28|1|N|A|1092
3J28|1|N|A|1093
3J28|1|N|G|1094
3J28|1|N|U|1095
3J28|1|N|C|1096

Current chains

Chain N

16S rRNA

Nearby chains