HL_3J28_029

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

3J28|1|N|C|1322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J28_029 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.3571

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

3J28|1|N|C|1314
3J28|1|N|U|1315
3J28|1|N|G|1316
3J28|1|N|C|1317
3J28|1|N|A|1318
3J28|1|N|A|1319
3J28|1|N|C|1320
3J28|1|N|U|1321
3J28|1|N|C|1322
3J28|1|N|G|1323

Current chains

Chain N

16S rRNA

Nearby chains