HL_3J28_034

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J28_034 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.323

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

3J28|1|N|G|258
3J28|1|N|G|259
3J28|1|N|G|260
3J28|1|N|U|261
3J28|1|N|A|262
3J28|1|N|A|263
3J28|1|N|C|264
3J28|1|N|G|265
3J28|1|N|G|266
3J28|1|N|C|267
3J28|1|N|U|268

Current chains

Chain N

16S rRNA

Nearby chains