HL_3J29_008

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J29_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.3299

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3J29|1|N|A|320
3J29|1|N|A|321
3J29|1|N|C|322
3J29|1|N|U|323
3J29|1|N|G|324
3J29|1|N|A|325
3J29|1|N|G|326
3J29|1|N|A|327
3J29|1|N|C|328
3J29|1|N|A|329
3J29|1|N|C|330
3J29|1|N|G|331
3J29|1|N|G|332
3J29|1|N|U|333

Current chains

Chain N

16S rRNA

Nearby chains