HL_3J2B_006

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2B_006 not in the Motif Atlas

Geometric match to HL_6DME_003

Geometric discrepancy: 0.3884

The information below is about HL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3J2B|1|N|G|258
3J2B|1|N|G|259
3J2B|1|N|G|260
3J2B|1|N|U|261
3J2B|1|N|A|262
3J2B|1|N|A|263
3J2B|1|N|C|264
3J2B|1|N|G|265
3J2B|1|N|G|266
3J2B|1|N|C|267
3J2B|1|N|U|268

Current chains

Chain N

16S rRNA

Nearby chains