HL_3J2B_015

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2B_015 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.3394

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3J2B|1|N|C|689
3J2B|1|N|G|690
3J2B|1|N|G|691
3J2B|1|N|U|692
3J2B|1|N|G|693
3J2B|1|N|A|694
3J2B|1|N|A|695
3J2B|1|N|A|696
3J2B|1|N|U|697
3J2B|1|N|G|698

Current chains

Chain N

16S rRNA

Nearby chains