HL_3J2C_016

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2C_016 not in the Motif Atlas

Geometric match to HL_6DME_003

Geometric discrepancy: 0.3913

The information below is about HL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3J2C|1|N|G|258
3J2C|1|N|G|259
3J2C|1|N|G|260
3J2C|1|N|U|261
3J2C|1|N|A|262
3J2C|1|N|A|263
3J2C|1|N|C|264
3J2C|1|N|G|265
3J2C|1|N|G|266
3J2C|1|N|C|267
3J2C|1|N|U|268

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment