HL_3J2F_004

3D structure

PDB id

3J2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

17.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2F_004 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3514

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

3J2F|1|N|C|186
3J2F|1|N|G|187
3J2F|1|N|C|188
3J2F|1|N|A|189
3J2F|1|N|A|190
3J2F|1|N|G|191

Current chains

Chain N

16S rRNA

Nearby chains