HL_3J2G_006

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GGGUAACGGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2G_006 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.2701

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

3J2G|1|N|G|258
3J2G|1|N|G|259
3J2G|1|N|G|260
3J2G|1|N|U|261
3J2G|1|N|A|262
3J2G|1|N|A|263
3J2G|1|N|C|264
3J2G|1|N|G|265
3J2G|1|N|G|266
3J2G|1|N|C|267
3J2G|1|N|U|268

Current chains

Chain N

16S rRNA

Nearby chains