HL_3J45_004

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

3J45|1|3|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J45_004 not in the Motif Atlas

Geometric match to HL_4LFB_011

Geometric discrepancy: 0.2436

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

3J45|1|3|C|1533
3J45|1|3|U|1534
3J45|1|3|A|1535
3J45|1|3|C|1536
3J45|1|3|G|1537
3J45|1|3|G|1538

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain y

Protein translocase subunit SecY