HL_3J45_006

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

3J45|1|5|C|2145, 3J45|1|5|C|2146, 3J45|1|5|A|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J45_006 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5838

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

3J45|1|5|A|2142
3J45|1|5|C|2143
3J45|1|5|G|2144
3J45|1|5|C|2145
3J45|1|5|C|2146
3J45|1|5|A|2147
3J45|1|5|G|2148
3J45|1|5|U|2149

Current chains

Chain 5

23S ribosomal RNA

Nearby chains