HL_3J46_007
3D structure
- PDB id
- 3J46 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the SecY protein translocation channel in action
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.1 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J46_007 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.2709
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_65794.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
3J46|1|1|U|59
3J46|1|1|G|60
3J46|1|1|C|61
3J46|1|1|U|62
3J46|1|1|A|63
3J46|1|1|A|64
3J46|1|1|U|65
3J46|1|1|C|66
3J46|1|1|U|67
3J46|1|1|G|68
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 23S ribosomal RNA
- Chain T
- 50S ribosomal protein L23P
- Chain Y
- 50S ribosomal protein L29P
- Chain y
- Protein translocase subunit SecY
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