HL_3J46_008
3D structure
- PDB id
- 3J46 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the SecY protein translocation channel in action
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.1 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J46_008 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.3607
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3J46|1|1|U|87
3J46|1|1|G|88
3J46|1|1|A|89
3J46|1|1|U|90
3J46|1|1|A|91
3J46|1|1|U|92
3J46|1|1|G|93
3J46|1|1|A|94
3J46|1|1|A|95
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23P
- Chain U
- 50S ribosomal protein L24P
- Chain Y
- 50S ribosomal protein L29P
- Chain n
- NC100
- Chain y
- Protein translocase subunit SecY
Coloring options: