HL_3J5L_041

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

3J5L|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J5L_041 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0768

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3J5L|1|A|A|1630
3J5L|1|A|G|1631
3J5L|1|A|A|1632
3J5L|1|A|G|1633
3J5L|1|A|A|1634
3J5L|1|A|A|1635
3J5L|1|A|U|1636

Current chains

Chain A

23S ribsomal RNA

Nearby chains