HL_3J6X_005

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3J6X|1|1S|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_005 not in the Motif Atlas

Geometric match to HL_2IZN_001

Geometric discrepancy: 0.3251

The information below is about HL_2IZN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

3J6X|1|1S|C|230
3J6X|1|1S|U|231
3J6X|1|1S|U|232
3J6X|1|1S|C|233
3J6X|1|1S|G|234
3J6X|1|1S|G|235

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains