HL_3J6X_020
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_020 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2104
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
3J6X|1|1S|A|900
3J6X|1|1S|G|901
3J6X|1|1S|G|902
3J6X|1|1S|U|903
3J6X|1|1S|G|904
3J6X|1|1S|A|905
3J6X|1|1S|A|906
3J6X|1|1S|A|907
3J6X|1|1S|U|908
3J6X|1|1S|U|909
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 14
- 40S ribosomal protein S14
- Chain S5
- 40S ribosomal protein S5
Coloring options: