HL_3J6X_049

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

3J6X|1|2S|U|545, 3J6X|1|2S|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_049 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.3862

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

3J6X|1|2S|C|543
3J6X|1|2S|C|544
3J6X|1|2S|U|545
3J6X|1|2S|C|546
3J6X|1|2S|G|547
3J6X|1|2S|G|548

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains