HL_3J6X_051
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 3J6X|1|2S|C|648
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_051 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.1837
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
3J6X|1|2S|U|640
3J6X|1|2S|C|641
3J6X|1|2S|U|642
3J6X|1|2S|U|643
3J6X|1|2S|G|644
3J6X|1|2S|A|645
3J6X|1|2S|A|646
3J6X|1|2S|A|647
3J6X|1|2S|C|648
3J6X|1|2S|A|649
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 68
- 60S ribosomal protein L28
- Chain 72
- 60S ribosomal protein L32
- Chain L3
- 60S ribosomal protein L3
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