HL_3J6X_059

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

3J6X|1|2S|C|959, 3J6X|1|2S|A|962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_059 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2986

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3J6X|1|2S|C|958
3J6X|1|2S|C|959
3J6X|1|2S|U|960
3J6X|1|2S|C|961
3J6X|1|2S|A|962
3J6X|1|2S|G|963

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 68

60S ribosomal protein L28

Chain 69

60S ribosomal protein L29

Chain 82

60S ribosomal protein L42