HL_3J6X_066
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1351, 3J6X|1|2S|A|1352, 3J6X|1|2S|U|1353, 3J6X|1|2S|G|1354, 3J6X|1|2S|U|1356
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_066 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.4176
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3J6X|1|2S|U|1347
3J6X|1|2S|U|1348
3J6X|1|2S|G|1349
3J6X|1|2S|A|1350
3J6X|1|2S|U|1351
3J6X|1|2S|A|1352
3J6X|1|2S|U|1353
3J6X|1|2S|G|1354
3J6X|1|2S|A|1355
3J6X|1|2S|U|1356
3J6X|1|2S|G|1357
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 58
- 60S ribosomal protein L18
- Chain 72
- 60S ribosomal protein L32
- Chain L4
- 60S ribosomal protein L4
- Chain L6
- 60S ribosomal protein L6
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