HL_3J6X_074
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1687
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_074 not in the Motif Atlas
- Homologous match to HL_5TBW_037
- Geometric discrepancy: 0.2956
- The information below is about HL_5TBW_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J6X|1|2S|G|1680
3J6X|1|2S|U|1681
3J6X|1|2S|U|1682
3J6X|1|2S|A|1683
3J6X|1|2S|U|1684
3J6X|1|2S|C|1685
3J6X|1|2S|U|1686
3J6X|1|2S|U|1687
3J6X|1|2S|U|1688
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 59
- 60S ribosomal protein L19
- Chain 62
- 60S ribosomal protein L22
Coloring options: