HL_3J6X_076
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_076 not in the Motif Atlas
- Homologous match to HL_8P9A_150
- Geometric discrepancy: 0.2755
- The information below is about HL_8P9A_150
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68791.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J6X|1|2S|C|1759
3J6X|1|2S|A|1760
3J6X|1|2S|C|1761
3J6X|1|2S|C|1762
3J6X|1|2S|U|1763
3J6X|1|2S|U|1764
3J6X|1|2S|U|1765
3J6X|1|2S|G|1766
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 59
- 60S ribosomal protein L19
- Chain 62
- 60S ribosomal protein L22
Coloring options: