HL_3J6X_088

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUCUAAUUAGU

Length

11 nucleotides

Bulged bases

3J6X|1|2S|U|2298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_088 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3728

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

3J6X|1|2S|A|2291
3J6X|1|2S|U|2292
3J6X|1|2S|C|2293
3J6X|1|2S|U|2294
3J6X|1|2S|A|2295
3J6X|1|2S|A|2296
3J6X|1|2S|U|2297
3J6X|1|2S|U|2298
3J6X|1|2S|A|2299
3J6X|1|2S|G|2300
3J6X|1|2S|U|2301

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain 63

60S ribosomal protein L23

Chain 81

60S ribosomal protein L41