HL_3J6X_094

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

3J6X|1|2S|A|2637, 3J6X|1|2S|C|2644

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_094 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.186

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

3J6X|1|2S|U|2633
3J6X|1|2S|U|2634
3J6X|1|2S|A|2635
3J6X|1|2S|A|2636
3J6X|1|2S|A|2637
3J6X|1|2S|C|2638
3J6X|1|2S|G|2639
3J6X|1|2S|A|2640
3J6X|1|2S|U|2641
3J6X|1|2S|A|2642
3J6X|1|2S|A|2643
3J6X|1|2S|C|2644
3J6X|1|2S|G|2645

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 61

60S ribosomal protein L21

Chain 69

60S ribosomal protein L29