HL_3J6X_099
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 3J6X|1|2S|G|2777
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_099 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.2296
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
3J6X|1|2S|C|2776
3J6X|1|2S|G|2777
3J6X|1|2S|G|2778
3J6X|1|2S|A|2779
3J6X|1|2S|A|2780
3J6X|1|2S|U|2781
3J6X|1|2S|U|2782
3J6X|1|2S|U|2783
3J6X|1|2S|G|2784
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 68
- 60S ribosomal protein L28
- Chain 76
- 60S ribosomal protein L36
- Chain 82
- 60S ribosomal protein L42
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