HL_3J6Y_004

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

3J6Y|1|1S|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_004 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.123

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J6Y|1|1S|C|190
3J6Y|1|1S|C|191
3J6Y|1|1S|U|192
3J6Y|1|1S|U|193
3J6Y|1|1S|U|194
3J6Y|1|1S|G|195

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8