HL_3J6Y_012

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

3J6Y|1|1S|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.203

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J6Y|1|1S|U|450
3J6Y|1|1S|A|451
3J6Y|1|1S|A|452
3J6Y|1|1S|U|453
3J6Y|1|1S|U|454
3J6Y|1|1S|C|455
3J6Y|1|1S|A|456

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S4

40S ribosomal protein S4